Serveur d'exploration sur les relations entre la France et l'Australie

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections.

Identifieur interne : 000E37 ( Main/Exploration ); précédent : 000E36; suivant : 000E38

Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections.

Auteurs : Anita Lerch [Suisse] ; Cristian Koepfli [Australie] ; Natalie E. Hofmann [Suisse] ; Camilla Messerli [Suisse] ; Stephen Wilcox [Australie] ; Johanna H. Kattenberg [Papouasie-Nouvelle-Guinée] ; Inoni Betuela [Papouasie-Nouvelle-Guinée] ; Liam O'Connor [Australie] ; Ivo Mueller [Australie] ; Ingrid Felger [Suisse]

Source :

RBID : pubmed:29132317

Abstract

Amplicon deep sequencing permits sensitive detection of minority clones and improves discriminatory power for genotyping multi-clone Plasmodium falciparum infections. New amplicon sequencing and data analysis protocols are needed for genotyping in epidemiological studies and drug efficacy trials of P. falciparum.

DOI: 10.1186/s12864-017-4260-y
PubMed: 29132317


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections.</title>
<author>
<name sortKey="Lerch, Anita" sort="Lerch, Anita" uniqKey="Lerch A" first="Anita" last="Lerch">Anita Lerch</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Koepfli, Cristian" sort="Koepfli, Cristian" uniqKey="Koepfli C" first="Cristian" last="Koepfli">Cristian Koepfli</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Hofmann, Natalie E" sort="Hofmann, Natalie E" uniqKey="Hofmann N" first="Natalie E" last="Hofmann">Natalie E. Hofmann</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Messerli, Camilla" sort="Messerli, Camilla" uniqKey="Messerli C" first="Camilla" last="Messerli">Camilla Messerli</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wilcox, Stephen" sort="Wilcox, Stephen" uniqKey="Wilcox S" first="Stephen" last="Wilcox">Stephen Wilcox</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kattenberg, Johanna H" sort="Kattenberg, Johanna H" uniqKey="Kattenberg J" first="Johanna H" last="Kattenberg">Johanna H. Kattenberg</name>
<affiliation wicri:level="1">
<nlm:affiliation>Papua New Guinea Institute of Medical Research, Madang, Papua New Guinea.</nlm:affiliation>
<country xml:lang="fr">Papouasie-Nouvelle-Guinée</country>
<wicri:regionArea>Papua New Guinea Institute of Medical Research, Madang</wicri:regionArea>
<wicri:noRegion>Madang</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Betuela, Inoni" sort="Betuela, Inoni" uniqKey="Betuela I" first="Inoni" last="Betuela">Inoni Betuela</name>
<affiliation wicri:level="1">
<nlm:affiliation>Papua New Guinea Institute of Medical Research, Madang, Papua New Guinea.</nlm:affiliation>
<country xml:lang="fr">Papouasie-Nouvelle-Guinée</country>
<wicri:regionArea>Papua New Guinea Institute of Medical Research, Madang</wicri:regionArea>
<wicri:noRegion>Madang</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="O Connor, Liam" sort="O Connor, Liam" uniqKey="O Connor L" first="Liam" last="O'Connor">Liam O'Connor</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Mueller, Ivo" sort="Mueller, Ivo" uniqKey="Mueller I" first="Ivo" last="Mueller">Ivo Mueller</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Felger, Ingrid" sort="Felger, Ingrid" uniqKey="Felger I" first="Ingrid" last="Felger">Ingrid Felger</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland. Ingrid.Felger@unibas.ch.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2017">2017</date>
<idno type="RBID">pubmed:29132317</idno>
<idno type="pmid">29132317</idno>
<idno type="doi">10.1186/s12864-017-4260-y</idno>
<idno type="wicri:Area/PubMed/Corpus">000016</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000016</idno>
<idno type="wicri:Area/PubMed/Curation">000016</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000016</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000016</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000016</idno>
<idno type="wicri:Area/Ncbi/Merge">005207</idno>
<idno type="wicri:Area/Ncbi/Curation">005207</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">005207</idno>
<idno type="wicri:Area/Main/Merge">000E32</idno>
<idno type="wicri:Area/Main/Curation">000E37</idno>
<idno type="wicri:Area/Main/Exploration">000E37</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections.</title>
<author>
<name sortKey="Lerch, Anita" sort="Lerch, Anita" uniqKey="Lerch A" first="Anita" last="Lerch">Anita Lerch</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Koepfli, Cristian" sort="Koepfli, Cristian" uniqKey="Koepfli C" first="Cristian" last="Koepfli">Cristian Koepfli</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Hofmann, Natalie E" sort="Hofmann, Natalie E" uniqKey="Hofmann N" first="Natalie E" last="Hofmann">Natalie E. Hofmann</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Messerli, Camilla" sort="Messerli, Camilla" uniqKey="Messerli C" first="Camilla" last="Messerli">Camilla Messerli</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wilcox, Stephen" sort="Wilcox, Stephen" uniqKey="Wilcox S" first="Stephen" last="Wilcox">Stephen Wilcox</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kattenberg, Johanna H" sort="Kattenberg, Johanna H" uniqKey="Kattenberg J" first="Johanna H" last="Kattenberg">Johanna H. Kattenberg</name>
<affiliation wicri:level="1">
<nlm:affiliation>Papua New Guinea Institute of Medical Research, Madang, Papua New Guinea.</nlm:affiliation>
<country xml:lang="fr">Papouasie-Nouvelle-Guinée</country>
<wicri:regionArea>Papua New Guinea Institute of Medical Research, Madang</wicri:regionArea>
<wicri:noRegion>Madang</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Betuela, Inoni" sort="Betuela, Inoni" uniqKey="Betuela I" first="Inoni" last="Betuela">Inoni Betuela</name>
<affiliation wicri:level="1">
<nlm:affiliation>Papua New Guinea Institute of Medical Research, Madang, Papua New Guinea.</nlm:affiliation>
<country xml:lang="fr">Papouasie-Nouvelle-Guinée</country>
<wicri:regionArea>Papua New Guinea Institute of Medical Research, Madang</wicri:regionArea>
<wicri:noRegion>Madang</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="O Connor, Liam" sort="O Connor, Liam" uniqKey="O Connor L" first="Liam" last="O'Connor">Liam O'Connor</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Mueller, Ivo" sort="Mueller, Ivo" uniqKey="Mueller I" first="Ivo" last="Mueller">Ivo Mueller</name>
<affiliation wicri:level="1">
<nlm:affiliation>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Walter and Eliza Hall Institute of Medical Research, Parkville, VIC</wicri:regionArea>
<wicri:noRegion>VIC</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Felger, Ingrid" sort="Felger, Ingrid" uniqKey="Felger I" first="Ingrid" last="Felger">Ingrid Felger</name>
<affiliation wicri:level="1">
<nlm:affiliation>Swiss Tropical and Public Health Institute, Basel, Switzerland. Ingrid.Felger@unibas.ch.</nlm:affiliation>
<country xml:lang="fr">Suisse</country>
<wicri:regionArea>Swiss Tropical and Public Health Institute, Basel</wicri:regionArea>
<wicri:noRegion>Basel</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">BMC genomics</title>
<idno type="eISSN">1471-2164</idno>
<imprint>
<date when="2017" type="published">2017</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Amplicon deep sequencing permits sensitive detection of minority clones and improves discriminatory power for genotyping multi-clone Plasmodium falciparum infections. New amplicon sequencing and data analysis protocols are needed for genotyping in epidemiological studies and drug efficacy trials of P. falciparum.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Australie</li>
<li>Papouasie-Nouvelle-Guinée</li>
<li>Suisse</li>
</country>
</list>
<tree>
<country name="Suisse">
<noRegion>
<name sortKey="Lerch, Anita" sort="Lerch, Anita" uniqKey="Lerch A" first="Anita" last="Lerch">Anita Lerch</name>
</noRegion>
<name sortKey="Felger, Ingrid" sort="Felger, Ingrid" uniqKey="Felger I" first="Ingrid" last="Felger">Ingrid Felger</name>
<name sortKey="Hofmann, Natalie E" sort="Hofmann, Natalie E" uniqKey="Hofmann N" first="Natalie E" last="Hofmann">Natalie E. Hofmann</name>
<name sortKey="Messerli, Camilla" sort="Messerli, Camilla" uniqKey="Messerli C" first="Camilla" last="Messerli">Camilla Messerli</name>
</country>
<country name="Australie">
<noRegion>
<name sortKey="Koepfli, Cristian" sort="Koepfli, Cristian" uniqKey="Koepfli C" first="Cristian" last="Koepfli">Cristian Koepfli</name>
</noRegion>
<name sortKey="Mueller, Ivo" sort="Mueller, Ivo" uniqKey="Mueller I" first="Ivo" last="Mueller">Ivo Mueller</name>
<name sortKey="O Connor, Liam" sort="O Connor, Liam" uniqKey="O Connor L" first="Liam" last="O'Connor">Liam O'Connor</name>
<name sortKey="Wilcox, Stephen" sort="Wilcox, Stephen" uniqKey="Wilcox S" first="Stephen" last="Wilcox">Stephen Wilcox</name>
</country>
<country name="Papouasie-Nouvelle-Guinée">
<noRegion>
<name sortKey="Kattenberg, Johanna H" sort="Kattenberg, Johanna H" uniqKey="Kattenberg J" first="Johanna H" last="Kattenberg">Johanna H. Kattenberg</name>
</noRegion>
<name sortKey="Betuela, Inoni" sort="Betuela, Inoni" uniqKey="Betuela I" first="Inoni" last="Betuela">Inoni Betuela</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000E37 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000E37 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Asie
   |area=    AustralieFrV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:29132317
   |texte=   Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:29132317" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a AustralieFrV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Dec 5 10:43:12 2017. Site generation: Tue Mar 5 14:07:20 2024